All the tools you need to analyse your miRNAs

miRNAMap


miRNA Databases


Analysis Scheme:
miRNAMap 2.0 collects experimentally verified microRNAs and experimentally verified miRNA target genes in human, mouse, rat and other metazoan genomes. Three computational tools, miRanda, RNAhybrid and TargetScan, were employed to identify miRNA targets in 3'-UTR of genes as well as the known miRNA targets. Additionally, miRNA expression profiles can provide valuable clues on the characteristics of miRNAs, including tissue specificity and differential expression in cancer/normal cell.

Homepage: Link

Last Software Update: July 1, 2007
Publication Date: Dec. 23, 2007
Citations: 109 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • fly
  • worm
  • fish
  • rat
  • chicken
  • other animals (selectable)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • Ensembl
  • UCSC Genome Brower
  • GEO
  • RefSeq
  • HGNC
  • MGI
  • miRBase

  • miRNA Databases
    Software Used For Target Prediction:
  • miRanda
  • RNAhybrid
  • TargetScan

  • Data Collection:
  • miRNA basic information
  • target experimental
  • predicted target
  • target expression
  • miRNA expression






  • Comments & Ratings