All the tools you need to analyse your miRNAs


miRNA Databases

The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation.

Homepage: Link

Last Software Update: June 26, 2014
Publication Date: Nov. 25, 2013
Citations: 2410 [via Pubmed]

Organism Specific:
  • animals
  • plants
  • viruses

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
  • EMBL
  • NCBI
  • HGNC
  • Rfam
  • miRTarBase
  • TarBase
  • miRDB
  • RNA22
  • TargetMiner
  • TargetScan
  • PicTar
  • GEO

  • miRNA Databases
    Data Collection:
  • miRNA basic information
  • target experimental
  • predicted target
  • miRNA expression

  • Comments & Ratings