Sequencing Analysis Known miRNA Identification
ncPRO-seq is a tool for annotation and profiling of ncRNAs using deep-sequencing data. This comprehensive and flexible ncRNA analysis pipeline, aims in interrogating and performing detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO-seq pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families.
Last Software Update: Feb. 2, 2016
Publication Date: Oct. 7, 2012
Citations: 43 [via Pubmed]
Reference Genome Needed: (online) / (local)
Installation/User Level: advanced
Precomputed Target Results Available For Download: