All the tools you need to analyse your miRNAs

miREval


Novel miRNA/Precursor Prediction Known miRNA Identification


miREval 2.0 detects novel miRNAs from input DNA or RNA sequences using multiple bioinformatics approaches such as predicted secondary structure, phylogenetic conservation and shadowing and positional clustering. It also allows users to visualize RNA molecules in the sequence of interest that may be mistaken for miRNAs. miREval 2.0 also displays transcription factor (TF) binding sites that may regulate miRNAs in the input sequence and overlapping mRNA transcripts.

Homepage: Link

Last Software Update: July 10, 2015
Publication Date: Sept. 18, 2013
Citations: 7 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • worm
  • fly
  • fish
  • chicken
  • rat
  • viruses
  • other animals (selectable)

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 89% Specificity: 92%
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure
  • conservation
  • TF binding sites
  • known miRNA identification

  • Algorithm: SVM
    Novel miRNA / Precursor Analysis: Classification
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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