All the tools you need to analyse your miRNAs

miRDeep-P


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification


Analysis Scheme:
miRDP can be used to identify miRNA genes in plant species, even for those without detailed annotation. It is also designed to assign expression status to individual miRNA genes, which is critical as more miRNAs in plants belong to paralogous families with multiple members encoding identical or near-identical miRNAs.

Homepage: Link

Last Software Update: June 23, 2011
Publication Date: July 19, 2011
Citations: 69 [via Pubmed]

Organism Specific:
  • plants

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv3
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure

  • Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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