Novel miRNA/Precursor Prediction Sequencing Analysis Differential Expression Analysis Known miRNA Identification
Comprehensive analysis pipeline for deep microRNA sequencing (CAP-miRSeq) integrates read preprocessing, alignment, mature/precursor/novel miRNA qualification, variant detection in miRNA coding region, and flexible differential expression between experimental conditions. According to computational infrastructures, users can run samples sequentially or in parallel for fast processing. In either a case, summary and expression reports for all samples are generated for easier quality assessment and downstream analyses.
Last Software Update: Sept. 3, 2014
Publication Date: June 3, 2014
Citations: 58 [via Pubmed]
Reference Genome Needed:
Installation/User Level: advanced
Precomputed Target Results Available For Download: