All the tools you need to analyse your miRNAs


Sequencing Analysis IsomiRs Identification

Analysis Scheme:
QuagmiR - the first cloud-based tool to analyze isomiRs from next generation sequencing data. Using a novel and flexible searching algorithm designated for the detection and annotation of isomiRs of heterogeneous nature. It permits extensive customization of the query process and reference databases to meet the user’s diverse demands. QuagmiR is written in Python and can be obtained freely from Github. QuagmiR can be run from command-line on local machines, as well as high performance servers. A web-accessible version of the tool has also been made available for use by academic researchers through the National Cancer Institute-funded Seven Bridges Cancer Genomics Cloud.

Homepage: Link

Reference: [Journal]

Organism Specific:
  • Invertebrates
  • plants
  • Vertebrates
  • viruses
  • animals
  • mouse
  • fish
  • worm
  • rat
  • fly
  • human
  • chicken
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • small-RNA-seq.fastq
  • motif-consensus.fa

  • Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • isomiRs identyfication
  • other ncRNA identification

  • Sequencing Platform Specific: Illumina,454
    PARE/CLIP-Seq: /
    IsomiRs Identification
    NGS Data Needed:

    Comments & Ratings