All the tools you need to analyse your miRNAs

miRge


Sequencing Analysis Known miRNA Identification IsomiRs Identification


Analysis Scheme:
miRge is a logical, ultrafast, small RNA-seq solution to process samples in a highly multiplexed fashion, resulting in dramatically decreased computational requirements when processing sets of samples in a single run. It utilizes a unique sequential alignment algorithm for annotation of small RNA-seq data. Output is given for miRNAs as raw reads and reads per million (RPM) in addition to isomiR data and reads for all other RNA species (tRNA, rRNA, snoRNA, mRNA). IsomiR entropy can be determined for each sample or across samples in a multiplex run.

Homepage: Link

Last Software Update: Dec. 30, 2015
Publication Date: Nov. 16, 2015
Citations: 33 [via Pubmed]

Organism Specific:
  • any

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPLv3
    Input Data Required:
  • reference miRNA sequences
  • reference hairpin miRNA sequences
  • reference other ncRNA sequences
  • reference mRNA sequences

  • Sequencing Analysis
    Algorithm Features:
  • known miRNA identification
  • isomiRs identyfication
  • other ncRNA identification

  • Sequencing Platform Specific: any
    PARE/CLIP-Seq: /
    Known miRNA Identification
    NGS Data Needed:
    IsomiRs Identification
    NGS Data Needed:





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