All the tools you need to analyse your miRNAs


Target Functional Analysis Differential Expression Analysis

Analysis Scheme:
miRNet is an easy-to-use web-based tool with comprehensive supports for statistical analysis and functional interpretation of various datasets generated in miRNAs studies. Users can explore the results in miRNA-target interaction networks with powerful features to assist in biological understanding.

Homepage: Link

Last Software Update: July 20, 2016
Publication Date: April 21, 2016
Citations: 223 [via Pubmed]

Organism Specific:
  • other animals (selectable)
  • mouse
  • fish
  • worm
  • rat
  • fly
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Input Data Required:
  • a list of: miRNAs; genes; lncRNAs; small compounds; diseases; epigenetic modifiers
  • a gene expression table (microarray or RNAseq)
  • a qPCR data table

  • Cross-Refferences:
  • miRBase
  • NLM
  • PubMed
  • PuBChem
  • Entrez
  • TarBase

  • Differential Expression Analysis
    Algorithm: limma, edgeR
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Target Functional Analysis
    Algorithm: Hypergeometric, empirical sampling
    Analysis Features:
  • GO Terms
  • KEGG Pathways
  • NGS Data Needed:
    Target Prediction Data Needed:

    Comments & Ratings
    • حسين ثابت Fri 17 Aug 2018 20:46
      nice prog.