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eRNA


Novel miRNA/Precursor Prediction Sequencing Analysis Differential Expression Analysis Known miRNA Identification


Analysis Scheme:
eRNA focuses on the common tools required for the mapping and quantification analysis of miRNA-seq and mRNA-seq data. The software package provides an additional choice for scientists who require a user-friendly computing environment and high-throughput capacity for large data analysis.

Homepage: Link

Last Software Update: Jan. 6, 2014
Publication Date: March 5, 2014
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 11 [via Pubmed]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced (installation)/ easy (usage)
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: GPL
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • differential expression
  • precursor prediction

    • Sequencing Platform Specific: Illumina
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • conservation

    • Algorithm: miRDeep2 method
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Differential Expression Analysis
    Algorithm: DESeq, Cufflinks, party
    miRNA differential expression:
    mRNA differential expression:
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:





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