TarPmiR

Analysis Scheme:

Approach for miRNA target site prediction which includes 13 different features.

Homepage: Link

Last Software Update: March 19, 2016

Publication Date: May 20, 2016

Reference: [Journal] [Pubmed] [CrossRef]

Citations: 83 [via Pubmed]

Organism Specific:

human

Reference Genome Needed:

Online/Local: /

Installation/User Level: easy

User Adjustability:

User support:

Precomputed Target Results Available For Download:

Performance : Correct predictions: 74,2%

License: Free for academic use

Input Data Required:

miRNA sequence (FASTA)

mRNA sequence (FASTA)

Algorithm Features:

seed match

conservation

free energy

site accessibility

machine learning

3' compensatory pairing

local AU content

m/e motif

the total number of paired positions

the length of the target mRNA region

the lenght of the largest consecutive pairings

and two others

Target Region: any

Target Annotation:

Algorithm: Random Forest-based

NGS Data Needed:

Metaserver: