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TargetRank


Target Prediction


TargetRank scores the seed matches in a UTR relative to a given siRNA or miRNA, and then calculates an overall score for the mRNA as a whole by summing the scores for all seed matches present in the 3' UTR.

Homepage: Link

Last Software Update: Sept. 13, 2007
Publication Date: Sept. 5, 2007
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 194 [via Pubmed]

Organism Specific:
  • human
  • mouse

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Cross-Refferences:
  • NCBI

    • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • target-site abundance
  • local AU content

    • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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