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RNA22


Target Prediction


Analysis Scheme:
Rna22, a method for identifying microRNA binding sites and their corresponding heteroduplexes. Rna22 does not relay upon cross-species conservation, is resilient to noise, and, unlike previous methods, it first finds putative microRNA binding sites in the sequence of interest, then identifies the targeting microRNA.

Homepage: Link

Last Software Update: April 9, 2015
Publication Date: July 26, 2006
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 992 [via Pubmed]

Organism Specific:
  • animals

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 83%, FPR: 19%
    Target Prediction
    Algorithm Features:
  • seed match
  • free energy
  • G:U pairs allowed in the seed
  • sensitivity/specificity settings
  • pattern recognision

    • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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