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GUUGle


Target Prediction


GUUGle efficiently locates potential helical regions under RNA base pairing rules, which include Watson-Crick as well as G-U pairs. It accepts a target and a query set of sequences, and determines all exact matches under RNA rules between target and query sequences that exceed a specified length.

Homepage: Link

Last Software Update: June 25, 2015
Publication Date: Jan. 10, 2006
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 23 [via Pubmed]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Target Prediction
    Algorithm Features:
  • seed match
  • G:U pairs allowed in the seed

    • Target Region: any
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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