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mirPRo


Novel miRNA/Precursor Prediction Sequencing Analysis Known miRNA Identification IsomiRs Identification


Analysis Scheme:
mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works for species that has reference genome.

Homepage: Link

Last Software Update: Oct. 23, 2016
Publication Date: Oct. 5, 2015
Reference: [Journal] [Pubmed] [CrossRef]
Citations: 22 [via Pubmed]

Organism Specific:
  • any

    • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    License: CC BY-NC-SA 3.0
    Sequencing Analysis
    Algorithm Features:
  • novel miRNA Identification
  • known miRNA identification
  • precursor prediction
  • isomiRs identyfication

    • Sequencing Platform Specific: Any
    PARE/CLIP-Seq: /
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • structure
  • conservation
  • fold-change criterion

    • Algorithm: miRDeep2
    Novel miRNA / Precursor Analysis: Prediction
    NGS Data Needed:
    Known miRNA Identification
    NGS Data Needed:
    IsomiRs Identification
    NGS Data Needed:





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