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Job UUID: f0aff80a-72e3-4655-adc0-374aeea5a006
Name: mir-520c-3p
Description:
Job link:
Submission date: 2021-10-12 08:40:11
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Custom parameters

  • targetspy
    • -threshold: "sens", Threshold: sens, spec or any number in (0,1). Default is sens
  • rna22
    • maxguwobbles: "-1", Maximum number of G:U wobbles allowed in seed (-1 corresponds to "no limit")
    • minenergy: "-12", Energy threshold
    • threshold: "7000000", The threshold value according to sensitivity/specificity settings of RNA22 (default is: sensitivity of 63%, specificity of 61%)
    • seedmismatchsallowed: "1", Maximum number of mismatches allowed in seed
    • seedsize: "7", Lenght of seed
    • minpairmatchs: "12", Minimum number of paired bases in heteroduplex
  • guugle
    • -d: "10", Output only matches with length of at least x
  • microtar
  • rnahybrid
    • -e: "-17", Energy threshold
    • -f: "2,8", Helix constraint
    • -v: "0", Maximal bulge loop size
  • miranda
    • -en: "1.0", Energy threshold (-E kcal/mol)
    • -sc: "140.0", Score threshold
  • pita
  • mirmap
    • allowed_lengths: "[6,7]", Allowed lengths
    • allowed_mismatches: "{6:0,7:0}", Allowed mismatches
    • allowed_gu_wobbles: "{6:0,7:0}", Allowed GU wobbles
    • Basic Extended

    Basic and Extended are two different analysis modes. Basic mode denotes unique pairs of mRNA and miRNA, while Extended mode treats triplets (miRNA, mRNA, and position in given mRNA) unique.
    Clear Filtering

    Download Table
    CSV XLS XLSX
    # mRNA miRNA Number of
    Binding Sites    		 targetspy rna22 guugle microtar rnahybrid miranda pita mirmap Total Number
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