All the tools you need to analyse your miRNAs

mirWIP


Target Prediction


mirWIP can be used to capture all known conserved miRNA-mRNA target relationships in Caenorhabditis elegans at a lower false-positive rate than can the current standard methods

Homepage: Link Offline

Last Software Update: Aug. 17, 2008
Publication Date: Aug. 17, 2008
Citations: 98 [via Pubmed]

Organism Specific:
  • Worm

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Accuracy: 63.6%
    Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • G:U pairs allowed in the seed

  • Target Region: 3' UTR
    Target Annotation:
    NGS Data Needed:
    Metaserver:





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