All the tools you need to analyse your miRNAs

miRror Suite

Target Prediction

Analysis Scheme:
The miRror application provides insights on microRNA (miRNA) regulation. It is based on the notion of a combinatorial regulation by an ensemble of miRNAs or genes. miRror integrates predictions from a dozen of miRNA resources that are based on complementary algorithms into a unified statistical framework. For miRNAs set as input, the online tool provides a ranked list of targets, based on set of resources selected by the user, according to their significance of being coordinately regulated. Symmetrically, a set of genes can be used as input to suggest a set of miRNAs. The user can restrict the analysis for the preferred tissue or cell line.

Homepage: Link

Last Software Update: April 23, 2014
Publication Date: June 6, 2014
Citations: 6 [via Pubmed]

Organism Specific:
  • human
  • mouse
  • fly
  • rat
  • worm
  • fish

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: easy
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
  • UniProt

  • Target Prediction
    Algorithm Features:
  • seed match
  • conservation
  • free energy
  • site accessibility
  • target-site abundance
  • machine learning
  • 3' compensatory pairing
  • G:U pairs allowed in the seed
  • local AU content

  • Target Region: 3'UTR, CDS, 5'UTR
    Target Annotation:
    NGS Data Needed:
    Target Prediction Methods Used For Metaserver:
  • MAMI
  • miRNAMap2
  • microCosm
  • DIANA-microT
  • miRanda
  • miRDB
  • mirZ
  • PicTar
  • PITA
  • RNA22
  • TargetRank
  • TargetScan

  • Comments & Ratings