All the tools you need to analyse your miRNAs

MiPred


Novel miRNA/Precursor Prediction


MiPred distinguish the real pre-miRNAs from other hairpin sequences with similar stem-loops (pseudo pre-miRNAs) with a use of hybrid feature which consists of local contiguous structure-sequence composition, minimum of free energy (MFE) of the secondary structure and P-value of randomization test.

Homepage: Link

Last Software Update: June 6, 2007
Publication Date: May 8, 2007
Citations: 148 [via Pubmed]

Organism Specific:
  • human

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: intermediate
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Specificity: 98.21%, Sensitivity: 95.09%
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure

  • Algorithm: SVM, Random Forest
    Novel miRNA / Precursor Analysis: Classification
    NGS Data Needed:





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