All the tools you need to analyse your miRNAs

HHMMiR


Novel miRNA/Precursor Prediction


Analysis Scheme:
An approach for de novo miRNA hairpin prediction in the absence of evolutionary conservation. This implements a Hierarchical Hidden Markov Model (HHMM) that utilizes region-based structural as well as sequence information of miRNA precursors.

Homepage: Link

Last Software Update: Aug. 19, 2009
Publication Date: Jan. 30, 2009
Citations: 26 [via Pubmed]

Organism Specific:
  • vertebrates
  • invertebrates

  • Reference Genome Needed:
    Online/Local: /
    Installation/User Level: advanced
    User Adjustability:
    User support:
    Precomputed Target Results Available For Download:
    Performance : Sensitivity: 84%, Specificity: 88%
    License: free
    Novel miRNA/Precursor Prediction
    Prediction Features:
  • sequence
  • structure

  • Algorithm: HHMM (Hirarchical Hidden Markov Model)
    Novel miRNA / Precursor Analysis: Classification
    NGS Data Needed:





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